RTCGA - The Cancer Genome Atlas Data Integration

The Cancer Genome Atlas (TCGA) Data Portal provides a platform for researchers to search, download, and analyze data sets generated by TCGA. It contains clinical information, genomic characterization data, and high level sequence analysis of the tumor genomes. The key is to understand genomics to improve cancer care. RTCGA package offers download and integration of the variety and volume of TCGA data using patient barcode key, what enables easier data possession. This may have an benefcial infuence on impact on development of science and improvement of patients' treatment. Furthermore, RTCGA package transforms TCGA data to tidy form which is convenient to use.

Last updated 24 days ago

immunooncologysoftwaredataimportdatarepresentationpreprocessingrnaseqsurvivaldnamethylationprincipalcomponentvisualization

8.91 score 51 stars 1 packages 106 scripts 925 downloads

archivist.github - Tools for Archiving, Managing and Sharing R Objects via GitHub

The extension of the 'archivist' package integrating the archivist with GitHub via GitHub API, 'git2r' packages and 'httr' package.

Last updated 6 years ago

4.74 score 5 stars 11 scripts 290 downloads

coxphSGD - Stochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model

Estimate coefficients of Cox proportional hazards model using stochastic gradient descent algorithm for batch data.

Last updated 7 years ago

3.85 score 7 stars 4 scripts 139 downloads

RZabbix - R Module for Working with the 'Zabbix API'

R interface to the 'Zabbix API' data <https://www.zabbix.com/documentation/3.0/manual/api/reference>. Enables easy and direct communication with 'Zabbix API' from 'R'.

Last updated 8 years ago

3.78 score 12 stars 3 scripts 107 downloads