RTCGA - The Cancer Genome Atlas Data Integration
The Cancer Genome Atlas (TCGA) Data Portal provides a platform for researchers to search, download, and analyze data sets generated by TCGA. It contains clinical information, genomic characterization data, and high level sequence analysis of the tumor genomes. The key is to understand genomics to improve cancer care. RTCGA package offers download and integration of the variety and volume of TCGA data using patient barcode key, what enables easier data possession. This may have an benefcial infuence on impact on development of science and improvement of patients' treatment. Furthermore, RTCGA package transforms TCGA data to tidy form which is convenient to use.
Last updated 2 months ago
bioconductor-package
1.24 score 118 dependencies 1 dependentsarchivist.github - Tools for Archiving, Managing and Sharing R Objects via GitHub
The extension of the 'archivist' package integrating the archivist with GitHub via GitHub API, 'git2r' packages and 'httr' package.
Last updated 6 years ago
5 stars 1.26 score 35 dependenciescoxphSGD - Stochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model
Estimate coefficients of Cox proportional hazards model using stochastic gradient descent algorithm for batch data.
Last updated 7 years ago
7 stars 1.39 score 3 dependenciesRZabbix - R Module for Working with the 'Zabbix API'
R interface to the 'Zabbix API' data <https://www.zabbix.com/documentation/3.0/manual/api/reference>. Enables easy and direct communication with 'Zabbix API' from 'R'.
Last updated 8 years ago
12 stars 1.58 score 8 dependencies